PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UR33Y
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 169aa    MW: 18689.5 Da    PI: 6.5054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UR33YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1551141196
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f  vl++s+v +s+++  p k + ++   +  e    t+    g+sW++ ++    +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v
  Araip.UR33Y  51 FHVVLSKSHVRRSCLMG-PSKDLVDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 141
                  66788899999998555.8888878842.22.2..34777889********3.45566799*************************99888777654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-1846145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-1746145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1749145No hitNo description
PROSITE profilePS5086312.04150147IPR003340B3 DNA binding domain
SMARTSM010193.4E-951147IPR003340B3 DNA binding domain
PfamPF023626.7E-1451140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKLCMQHLNL TSTNSNFAVS VEEQAPLPKP ADPAANLSSD EIAPLSGNPF FHVVLSKSHV  60
RRSCLMGPSK DLVDILPSAE VPTVLKCGGE SWDMVYRGHA PGRKFFDGGW RKFVKANCLV  120
EGDACVFELM ANSDEKIVFE VQILRGDVPK VFFKRDRIGE SEQKPIVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183644.11e-108PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0R0JHA45e-45A0A0R0JHA4_SOYBN; Uncharacterized protein
STRINGGLYMA07G35040.23e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-11related to vernalization1 1